TURNIP Variation Maps

Using the TURNIP software we have identified SNPs, pSNPs and INDELS in the rDNA regions of 34 S. cerevisiae and 35 S. paradoxus strains. Using the listbox below, multiple S.cerevisiae strains may be selected (using the SHIFT and/or CTRL buttons). Phylogenetic trees for the chosen strains are then calculated, based on the discovered variation within each strain (all variation types or a subset, based on the radio button selection). Trees are then displayed alongside heatmaps, which show the distribution of variation along the rDNA region.

Strain names differ between SGRP accessions and NCYC accessions (those that are used on the trees). Please see the strain name conversion table.
Please note that the S. paradoxus dataset will also be available for such analyses following publication of the dataset.

You can view the output from the TURNIP scripts by selecting the species, and then the strains in the box below.
S. cerevisiae S. paradoxus
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Select the type of variation you want to see:
All SNP pSNP Ins Del