3626: t (15) -> - (12) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250549770','gnl|ti|1250551756','gnl|ti|1250552033','gnl|ti|1250552252','gnl|ti|1250552615','gnl|ti|1250554812','gnl|ti|1250554999','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250558084','gnl|ti|1250559430'];
Consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250549654','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552624','gnl|ti|1250552777','gnl|ti|1250555498','gnl|ti|1250556640','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558732'];

3627: t (9) -> - (18) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250549273','gnl|ti|1250549770','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250551756','gnl|ti|1250552033','gnl|ti|1250552252','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554812','gnl|ti|1250554999','gnl|ti|1250556640','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250558084','gnl|ti|1250559430'];
Consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549654','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552624','gnl|ti|1250555498','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558732'];

3628: t (14) -> - (13) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250549273','gnl|ti|1250549770','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250552252','gnl|ti|1250552777','gnl|ti|1250554999','gnl|ti|1250556640','gnl|ti|1250556857','gnl|ti|1250558084','gnl|ti|1250559430'];
Consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549654','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250551756','gnl|ti|1250552033','gnl|ti|1250552615','gnl|ti|1250552624','gnl|ti|1250554812','gnl|ti|1250555498','gnl|ti|1250556691','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558732'];

3629: t (21) -> - (6) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250552777','gnl|ti|1250556640'];
Consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250551756','gnl|ti|1250552033','gnl|ti|1250552252','gnl|ti|1250552615','gnl|ti|1250552624','gnl|ti|1250554812','gnl|ti|1250554999','gnl|ti|1250555498','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558084','gnl|ti|1250558732','gnl|ti|1250559430'];

3630: ----- (19) -> gttaa (8) INS
Ins reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549654','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250555498','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558732'];
Consensus reads:$VAR1 = ['gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250549273','gnl|ti|1250549770','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250551756','gnl|ti|1250552033','gnl|ti|1250552252','gnl|ti|1250552615','gnl|ti|1250552624','gnl|ti|1250552777','gnl|ti|1250554812','gnl|ti|1250554999','gnl|ti|1250556640','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250558084','gnl|ti|1250559430'];

3659: g (12) -> a (14) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250549654','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552777','gnl|ti|1250553728','gnl|ti|1250555498','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558732'];
Consensus reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250549770','gnl|ti|1250552033','gnl|ti|1250552252','gnl|ti|1250552615','gnl|ti|1250552624','gnl|ti|1250554999','gnl|ti|1250555182','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250558084','gnl|ti|1250559430'];

3687: c (29) -> g (8) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250554515','gnl|ti|1250555498','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250558732'];
Consensus reads:$VAR1 = ['gnl|ti|1250549048','gnl|ti|1250549240','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550212','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551515','gnl|ti|1250552033','gnl|ti|1250552252','gnl|ti|1250552615','gnl|ti|1250552624','gnl|ti|1250552777','gnl|ti|1250553526','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554812','gnl|ti|1250554999','gnl|ti|1250555182','gnl|ti|1250555286','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250557475','gnl|ti|1250558084','gnl|ti|1250558279','gnl|ti|1250559430','gnl|ti|1250559680'];

3813: c (0) -> t (26) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3833: a (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552624','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554515','gnl|ti|1250555498','gnl|ti|1250556691','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3871: t (24) -> g (2) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250552615','gnl|ti|1250554379'];
Consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555498','gnl|ti|1250556691','gnl|ti|1250556879','gnl|ti|1250557019','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3900: a (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3902: c (0) -> t (26) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3913: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3914: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3915: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3916: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3917: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3918: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3919: t (0) -> - (26) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549039','gnl|ti|1250549048','gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559430','gnl|ti|1250559680'];

3920: t (0) -> - (23) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559680'];

3921: t (0) -> - (23) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559680'];

3922: t (0) -> - (23) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552615','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559680'];

3923: t (21) -> - (2) DEL 
Del reads:$VAR1 = ['gnl|ti|1250552615','gnl|ti|1250554379'];
Consensus reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250549654','gnl|ti|1250549770','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551222','gnl|ti|1250551478','gnl|ti|1250552777','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250555498','gnl|ti|1250556857','gnl|ti|1250556879','gnl|ti|1250557187','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558732','gnl|ti|1250559680'];

4101: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4102: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4103: c (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4104: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4105: a (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4106: c (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4107: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4108: c (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4109: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4110: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4111: c (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4112: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4113: a (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4114: c (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4115: g (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4116: c (0) -> - (24) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549273','gnl|ti|1250550440','gnl|ti|1250550480','gnl|ti|1250550781','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250552777','gnl|ti|1250553514','gnl|ti|1250554202','gnl|ti|1250554379','gnl|ti|1250554394','gnl|ti|1250554515','gnl|ti|1250555286','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557475','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250558732','gnl|ti|1250559680'];

4299: t (0) -> - (15) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551194','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559642'];

4300: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4301: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4302: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4303: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4304: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4305: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4306: t (0) -> - (17) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557917','gnl|ti|1250557923','gnl|ti|1250558097','gnl|ti|1250559642'];

4307: t (13) -> - (4) DEL 
Del reads:$VAR1 = ['gnl|ti|1250551194','gnl|ti|1250556395','gnl|ti|1250557917','gnl|ti|1250558097'];
Consensus reads:$VAR1 = ['gnl|ti|1250550215','gnl|ti|1250550233','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250552047','gnl|ti|1250554202','gnl|ti|1250554394','gnl|ti|1250556071','gnl|ti|1250556879','gnl|ti|1250556961','gnl|ti|1250557923','gnl|ti|1250559642'];

4484: a (26) -> t (2) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250555300','gnl|ti|1250555307'];
Consensus reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];

4486: a (0) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];

4487: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4488: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4489: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4490: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4491: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4492: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4493: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4494: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4495: a (1) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556395','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559478','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250556071'];

4496: a (6) -> - (23) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550573','gnl|ti|1250550691','gnl|ti|1250551194','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250554145','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250556044','gnl|ti|1250556427','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250551141','gnl|ti|1250554781','gnl|ti|1250555564','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250559478'];

4497: a (13) -> - (16) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250556044','gnl|ti|1250556427','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250550573','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559478'];

4498: a (13) -> - (16) DEL 
Del reads:$VAR1 = ['gnl|ti|1250550159','gnl|ti|1250550215','gnl|ti|1250550370','gnl|ti|1250550440','gnl|ti|1250550691','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552047','gnl|ti|1250552061','gnl|ti|1250553207','gnl|ti|1250556044','gnl|ti|1250556427','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559642'];
Consensus reads:$VAR1 = ['gnl|ti|1250550573','gnl|ti|1250551141','gnl|ti|1250551194','gnl|ti|1250554145','gnl|ti|1250554781','gnl|ti|1250555300','gnl|ti|1250555307','gnl|ti|1250555564','gnl|ti|1250556071','gnl|ti|1250556395','gnl|ti|1250558097','gnl|ti|1250558410','gnl|ti|1250559478'];

4786: g (27) -> t (2) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250550573','gnl|ti|1250554145'];
Consensus reads:$VAR1 = ['gnl|ti|1250549524','gnl|ti|1250550691','gnl|ti|1250550853','gnl|ti|1250551698','gnl|ti|1250551866','gnl|ti|1250552061','gnl|ti|1250552591','gnl|ti|1250552670','gnl|ti|1250553070','gnl|ti|1250553207','gnl|ti|1250553318','gnl|ti|1250553471','gnl|ti|1250554766','gnl|ti|1250554781','gnl|ti|1250555564','gnl|ti|1250556044','gnl|ti|1250556427','gnl|ti|1250556611','gnl|ti|1250557305','gnl|ti|1250558022','gnl|ti|1250558037','gnl|ti|1250558211','gnl|ti|1250558478','gnl|ti|1250559115','gnl|ti|1250559119','gnl|ti|1250559303','gnl|ti|1250559642'];

5069: g (0) -> t (20) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549390','gnl|ti|1250549524','gnl|ti|1250550078','gnl|ti|1250550175','gnl|ti|1250550853','gnl|ti|1250552591','gnl|ti|1250552670','gnl|ti|1250552824','gnl|ti|1250553070','gnl|ti|1250553318','gnl|ti|1250554145','gnl|ti|1250554372','gnl|ti|1250554766','gnl|ti|1250554962','gnl|ti|1250555127','gnl|ti|1250556427','gnl|ti|1250556611','gnl|ti|1250557305','gnl|ti|1250558022','gnl|ti|1250558037'];

5238: t (0) -> c (23) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549390','gnl|ti|1250550078','gnl|ti|1250550175','gnl|ti|1250550853','gnl|ti|1250551543','gnl|ti|1250552591','gnl|ti|1250552613','gnl|ti|1250552670','gnl|ti|1250552824','gnl|ti|1250553070','gnl|ti|1250553318','gnl|ti|1250554372','gnl|ti|1250554717','gnl|ti|1250554718','gnl|ti|1250554766','gnl|ti|1250554962','gnl|ti|1250555127','gnl|ti|1250556611','gnl|ti|1250557305','gnl|ti|1250558022','gnl|ti|1250558037','gnl|ti|1250558705','gnl|ti|1250558936'];

5248: g (0) -> a (21) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549390','gnl|ti|1250550078','gnl|ti|1250550175','gnl|ti|1250550853','gnl|ti|1250552591','gnl|ti|1250552613','gnl|ti|1250552670','gnl|ti|1250552824','gnl|ti|1250553070','gnl|ti|1250554372','gnl|ti|1250554717','gnl|ti|1250554718','gnl|ti|1250554766','gnl|ti|1250554962','gnl|ti|1250555127','gnl|ti|1250556611','gnl|ti|1250558037','gnl|ti|1250558478','gnl|ti|1250558705','gnl|ti|1250558852','gnl|ti|1250558936'];

5329: g (0) -> a (20) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250549390','gnl|ti|1250550078','gnl|ti|1250550175','gnl|ti|1250550853','gnl|ti|1250551512','gnl|ti|1250552591','gnl|ti|1250552613','gnl|ti|1250552824','gnl|ti|1250553070','gnl|ti|1250554372','gnl|ti|1250554717','gnl|ti|1250554718','gnl|ti|1250554766','gnl|ti|1250554962','gnl|ti|1250555127','gnl|ti|1250556611','gnl|ti|1250558037','gnl|ti|1250558705','gnl|ti|1250558852','gnl|ti|1250558936'];

5457: c (28) -> t (2) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250554717','gnl|ti|1250554718'];
Consensus reads:$VAR1 = ['gnl|ti|1250549390','gnl|ti|1250550026','gnl|ti|1250550175','gnl|ti|1250550853','gnl|ti|1250551512','gnl|ti|1250552487','gnl|ti|1250552613','gnl|ti|1250552824','gnl|ti|1250552948','gnl|ti|1250553070','gnl|ti|1250553318','gnl|ti|1250553684','gnl|ti|1250554290','gnl|ti|1250554372','gnl|ti|1250554962','gnl|ti|1250555127','gnl|ti|1250556596','gnl|ti|1250557152','gnl|ti|1250558037','gnl|ti|1250558211','gnl|ti|1250558478','gnl|ti|1250558650','gnl|ti|1250558705','gnl|ti|1250558936','gnl|ti|1250558962','gnl|ti|1250559128','gnl|ti|1250559143','gnl|ti|1250559576'];

5714: t (0) -> c (25) SNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250550026','gnl|ti|1250550208','gnl|ti|1250550287','gnl|ti|1250551274','gnl|ti|1250551512','gnl|ti|1250552487','gnl|ti|1250552948','gnl|ti|1250553037','gnl|ti|1250553516','gnl|ti|1250553823','gnl|ti|1250554290','gnl|ti|1250554295','gnl|ti|1250554741','gnl|ti|1250554825','gnl|ti|1250555243','gnl|ti|1250556596','gnl|ti|1250557092','gnl|ti|1250557152','gnl|ti|1250558523','gnl|ti|1250558650','gnl|ti|1250558705','gnl|ti|1250558962','gnl|ti|1250559143','gnl|ti|1250559409','gnl|ti|1250559576'];

6521: a (0) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549586','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551711','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250553446','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

6522: a (0) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549586','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551711','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250553446','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

6523: a (0) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549586','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551711','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250553446','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

6524: a (0) -> - (28) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549586','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551711','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250553446','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

6547: t (0) -> - (27) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250552350','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558044','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

6548: t (0) -> - (27) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250552350','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558044','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

6549: c (0) -> - (27) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549097','gnl|ti|1250549108','gnl|ti|1250549399','gnl|ti|1250549719','gnl|ti|1250549977','gnl|ti|1250550075','gnl|ti|1250550322','gnl|ti|1250550469','gnl|ti|1250550502','gnl|ti|1250550832','gnl|ti|1250550843','gnl|ti|1250551096','gnl|ti|1250551494','gnl|ti|1250551720','gnl|ti|1250551912','gnl|ti|1250552350','gnl|ti|1250554406','gnl|ti|1250555937','gnl|ti|1250556066','gnl|ti|1250556760','gnl|ti|1250557981','gnl|ti|1250558044','gnl|ti|1250558556','gnl|ti|1250558646','gnl|ti|1250559191','gnl|ti|1250559457','gnl|ti|1250559681'];

7881: a (33) -> g (2) pSNP 
Non-consensus reads:$VAR1 = ['gnl|ti|1250552251','gnl|ti|1250556572'];
Consensus reads:$VAR1 = ['gnl|ti|1250549647','gnl|ti|1250549659','gnl|ti|1250550782','gnl|ti|1250551591','gnl|ti|1250551922','gnl|ti|1250552616','gnl|ti|1250552853','gnl|ti|1250552860','gnl|ti|1250553470','gnl|ti|1250554121','gnl|ti|1250554516','gnl|ti|1250554620','gnl|ti|1250554625','gnl|ti|1250555319','gnl|ti|1250555441','gnl|ti|1250555497','gnl|ti|1250555568','gnl|ti|1250556550','gnl|ti|1250557088','gnl|ti|1250557188','gnl|ti|1250557235','gnl|ti|1250557578','gnl|ti|1250557667','gnl|ti|1250557703','gnl|ti|1250557748','gnl|ti|1250558048','gnl|ti|1250558116','gnl|ti|1250558208','gnl|ti|1250558731','gnl|ti|1250559096','gnl|ti|1250559110','gnl|ti|1250559410','gnl|ti|1250559592'];

9067: t (12) -> - (21) DEL 
Del reads:$VAR1 = ['gnl|ti|1250549769','gnl|ti|1250550371','gnl|ti|1250550733','gnl|ti|1250550990','gnl|ti|1250551142','gnl|ti|1250551223','gnl|ti|1250552486','gnl|ti|1250554310','gnl|ti|1250554395','gnl|ti|1250554765','gnl|ti|1250555183','gnl|ti|1250555287','gnl|ti|1250556878','gnl|ti|1250557561','gnl|ti|1250557581','gnl|ti|1250557645','gnl|ti|1250557826','gnl|ti|1250557952','gnl|ti|1250558851','gnl|ti|1250559116','gnl|ti|1250559431'];
Consensus reads:$VAR1 = ['gnl|ti|1250549047','gnl|ti|1250549239','gnl|ti|1250551195','gnl|ti|1250552778','gnl|ti|1250553371','gnl|ti|1250554146','gnl|ti|1250554782','gnl|ti|1250555301','gnl|ti|1250555308','gnl|ti|1250556858','gnl|ti|1250557372','gnl|ti|1250558021'];